Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 51308
Gene Symbol: REEP2
REEP2
0.010 GeneticVariation disease BEFREE With a combination of whole-genome mapping and exome sequencing, we identified three mutations in REEP2 in two families with HSP: a missense variant (c.107T>A [p.Val36Glu]) that segregated in the heterozygous state in a family with autosomal-dominant inheritance and a missense change (c.215T>A [p.Phe72Tyr]) that segregated in trans with a splice site mutation (c.105+3G>T) in a family with autosomal-recessive transmission. 24388663 2014
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.100 Biomarker disease BEFREE When HLA-DRB1 genotypes of patients with CLA and HSP were compared a significant increase of HLA-DRB1*15/16 and especially of HLA-DRB1*07 was observed in the patients fulfilling definitions for CLA compared to those with HSP. 12022354 2002
Entrez Id: 6687
Gene Symbol: SPG7
SPG7
0.100 GeneticVariation disease BEFREE We used a yeast complementation assay to evaluate the functional consequence of novel SPG7 sequence variants detected in the HSP patients. 20186691 2010
Entrez Id: 6683
Gene Symbol: SPAST
SPAST
0.100 GeneticVariation disease BEFREE We tested the autonomic function and performed genetic tests for the SPG4 and SPG3A forms of HSP. 24969372 2014
Entrez Id: 1636
Gene Symbol: ACE
ACE
0.060 GeneticVariation disease BEFREE We suggest that RAS gene polymorphisms (ACE-I/D, M235T or T174M) are significantly associated with susceptibility to HSP, organ involvement, and disease severity, which largely account for individual prognosis. 20702504 2010
Entrez Id: 80208
Gene Symbol: SPG11
SPG11
0.100 Biomarker disease BEFREE We studied in more detail the SPG5-related spectrum of complex phenotypes by screening CYPB1 for mutations in a large cohort of 105 Italian hereditary spastic paraplegias (HSPs) index patients including 50 patients with a complicated HSP (cHSP) phenotype overlapping the SPG11- and the SPG15-related forms except for the lack of thin corpus callosum and 55 pure patients. 21214876 2012
Entrez Id: 23503
Gene Symbol: ZFYVE26
ZFYVE26
0.080 Biomarker disease BEFREE We studied in more detail the SPG5-related spectrum of complex phenotypes by screening CYPB1 for mutations in a large cohort of 105 Italian hereditary spastic paraplegias (HSPs) index patients including 50 patients with a complicated HSP (cHSP) phenotype overlapping the SPG11- and the SPG15-related forms except for the lack of thin corpus callosum and 55 pure patients. 21214876 2012
Entrez Id: 51062
Gene Symbol: ATL1
ATL1
0.100 GeneticVariation disease BEFREE We showed that CPT1C, which localizes to the endoplasmic reticulum, is expressed in motor neurons and interacts with atlastin-1, an endoplasmic reticulum protein encoded by the ATL1 gene known to be mutated in pure HSPs. 25751282 2015
Entrez Id: 23503
Gene Symbol: ZFYVE26
ZFYVE26
0.080 GeneticVariation disease BEFREE We show that the gene KIAA0415 encodes a putative helicase that interacts with SPG11 and SPG15, two proteins mutated in hereditary spastic paraplegia (HSP). 20613862 2010
Entrez Id: 25833
Gene Symbol: POU2F3
POU2F3
0.010 GeneticVariation disease BEFREE We show that mutations in DDHD2 cause a specific complex HSP subtype (SPG54), thereby linking a member of the PLA(1) family to human neurologic disease. 23176823 2012
Entrez Id: 23259
Gene Symbol: DDHD2
DDHD2
0.050 GeneticVariation disease BEFREE We show that mutations in DDHD2 cause a specific complex HSP subtype (SPG54), thereby linking a member of the PLA(1) family to human neurologic disease. 23176823 2012
Entrez Id: 7190
Gene Symbol: HSP90B2P
HSP90B2P
0.100 GeneticVariation disease BEFREE We sequenced all exons of REEP1 and searched for rearrangements by multiplex ligation-dependent probe amplification (MLPA) in a large panel of 175 unrelated HSP index patients from kindreds with dominant inheritance (AD-HSP), with either pure (n = 102) or complicated (n = 73) forms of the disease, after exclusion of other known HSP genes. 21618648 2011
Entrez Id: 65055
Gene Symbol: REEP1
REEP1
0.100 GeneticVariation disease BEFREE We sequenced all exons of REEP1 and searched for rearrangements by multiplex ligation-dependent probe amplification (MLPA) in a large panel of 175 unrelated HSP index patients from kindreds with dominant inheritance (AD-HSP), with either pure (n = 102) or complicated (n = 73) forms of the disease, after exclusion of other known HSP genes. 21618648 2011
Entrez Id: 7190
Gene Symbol: HSP90B2P
HSP90B2P
0.100 GeneticVariation disease BEFREE We reviewed the literature for HSP with thin CC and found 113 HSP patients with thin CC previously described (35 with linkage to chromosome 15q13-15). 16102895 2006
Entrez Id: 6683
Gene Symbol: SPAST
SPAST
0.100 GeneticVariation disease BEFREE We report six new sequence variants in SPAST including a fourth non synonymous sequence variant in exon 1 and two synonymous changes of which one has been found in a HSP patient previously, but never in controls. 19423133 2009
Entrez Id: 547
Gene Symbol: KIF1A
KIF1A
0.040 Biomarker disease BEFREE We report on a previously unpublished de novo heterozygous likely pathogenic KIF1A variant associated with slowly progressive complicated SPG30 and stable cerebellar atrophy on long-term follow-up, adding to current knowledge on this HSP subtype. 31796088 2019
Entrez Id: 3798
Gene Symbol: KIF5A
KIF5A
0.100 GeneticVariation disease BEFREE We report a four-generation pedigree segregating an autosomal dominant phenotype for HSP and showing a linkage to the SPG10 locus, coding for Kinesin family member 5A. 15452312 2004
Entrez Id: 81790
Gene Symbol: RNF170
RNF170
0.010 GeneticVariation disease BEFREE We provide evidence that mutations in the ubiquitin E3 ligase gene RNF170, which targets inositol 1,4,5-trisphosphate receptors for degradation, are the likely cause of autosomal recessive HSP in four unrelated families and functionally evaluate the consequences of mutations in patient fibroblasts, mutant SH-SY5Y cells and by gene knockdown in zebrafish. 31636353 2019
Entrez Id: 9897
Gene Symbol: WASHC5
WASHC5
0.050 GeneticVariation disease BEFREE We present a novel strumpellin alteration in a small family with clinically pure HSP. 25454649 2014
Entrez Id: 6683
Gene Symbol: SPAST
SPAST
0.100 Biomarker disease BEFREE We performed targeted next generation sequencing (NGS) in a SPAST-negative HSP sample. 23812641 2013
Entrez Id: 2875
Gene Symbol: GPT
GPT
0.010 GeneticVariation disease BEFREE We performed Sanger sequencing of all coding exons and adjacent intron regions of the ALT1 gene in 111 Czech patients with pure form of HSP and additional Multiplex-Ligation Probe Analysis (MLPA) testing targeting the ATL1 gene in 56 of them. 28736820 2017
Entrez Id: 8847
Gene Symbol: DLEU2
DLEU2
0.010 GeneticVariation disease BEFREE We performed Sanger sequencing of all coding exons and adjacent intron regions of the ALT1 gene in 111 Czech patients with pure form of HSP and additional Multiplex-Ligation Probe Analysis (MLPA) testing targeting the ATL1 gene in 56 of them. 28736820 2017
Entrez Id: 6683
Gene Symbol: SPAST
SPAST
0.100 GeneticVariation disease BEFREE We performed PCR-based direct sequencing of SPG4, followed by a linkage analysis and subsequent Southern blot analysis in large Japanese kindred where 20 of 33 members were evaluated neurologically, and consequently 6 were affected with HSP. 15637712 2005
Entrez Id: 3798
Gene Symbol: KIF5A
KIF5A
0.100 GeneticVariation disease BEFREE We performed in vitro assays on dimeric recombinant Kif5A with HSP-causing mutations in the Switch I domain, which participates in the coordination and hydrolysis of ATP by kinesin. 28678816 2017
Entrez Id: 60498
Gene Symbol: IGAN1
IGAN1
0.070 GeneticVariation disease BEFREE We performed a search of the Medical Subject Headings terms (Henoch or Schönlein OR anaphylactoid purpura OR IgA nephropathy OR Berger nephropathy) AND (family OR familial). 26906300 2016